diff --git a/src/base/labels_nebius.config b/src/base/labels_nebius.config index f5a0cd03..f3c366c5 100644 --- a/src/base/labels_nebius.config +++ b/src/base/labels_nebius.config @@ -111,6 +111,9 @@ process { ( workflow.containerEngine == "docker" ? '--gpus all': null ) } } +withLabel: hightime { time = 12.h } +withLabel: veryhightime { time = 24.h } + // make sure publishstates gets enough disk space and memory withName:'.*publishStatesProc' { memory = '16GB' diff --git a/src/methods_segmentation/watershed/config.vsh.yaml b/src/methods_segmentation/watershed/config.vsh.yaml index fb17c4b9..07bb3528 100644 --- a/src/methods_segmentation/watershed/config.vsh.yaml +++ b/src/methods_segmentation/watershed/config.vsh.yaml @@ -173,5 +173,5 @@ runners: - type: executable - type: nextflow directives: - label: [ hightime, midcpu, veryhighmem ] + label: [ hightime, midcpu, highmem ] diff --git a/src/methods_transcript_assignment/clustermap/config.vsh.yaml b/src/methods_transcript_assignment/clustermap/config.vsh.yaml index 68dfa46b..e6a2f7e4 100644 --- a/src/methods_transcript_assignment/clustermap/config.vsh.yaml +++ b/src/methods_transcript_assignment/clustermap/config.vsh.yaml @@ -154,4 +154,4 @@ runners: - type: executable - type: nextflow directives: - label: [ veryhightime, midcpu, veryhighmem ] + label: [ veryhightime, midcpu, highmem ] diff --git a/src/methods_transcript_assignment/pciseq/config.vsh.yaml b/src/methods_transcript_assignment/pciseq/config.vsh.yaml index 21a2afdf..15ed10fa 100644 --- a/src/methods_transcript_assignment/pciseq/config.vsh.yaml +++ b/src/methods_transcript_assignment/pciseq/config.vsh.yaml @@ -163,4 +163,4 @@ runners: - type: executable - type: nextflow directives: - label: [ veryhightime, midcpu, veryhighmem ] + label: [ veryhightime, midcpu, highmem ]