This GitHub repository contains the code for behavioral control, in vivo electrophysiological recording, fiber photometry recording, optogenetic manipulation, and data analysis for the BF-PV sustained attention project.

Repository structure

• ephys_acquisition_optostim/: behavioral task control, ephys recording, opto-tagging scripts
• ephys_analysis/: ephys data preprocessing, and figure-generation scripts
• photometry_acquisition_optostim/: behavioral task control, fiber photometry recording, optogenetic manipulation scripts
• photometry_analysis/: preprocessing, and figure-generation scripts
• ephys_data/: small example ephys datasets
• photometry_data/: small example photometry datasets
• external_code/: code adapted from other public repositories

Data availability

Full recorded datasets are not stored in this GitHub repository because of file size. They are available on the DANDI Archive at the following URL: https://dandiarchive.org/dandiset/001867.

External code

Some code may be adapted from other public repositories. Original source links, authors, licenses, and modifications are documented in the relevant folders.

Contact

For questions, please contact Shujing Li.