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ExtractHLAread.sh fails when the input file is in .cram format.

Status: Open.

#70 In deepomicslab/SpecHLA;

· pjgreer opened on Mar 5, 2026

HLA Allele and LoH Calling on WXS Tumors

Status: Open.

#57 In deepomicslab/SpecHLA;

· andrewgalbraith21 opened on Jul 29, 2025

HLA typing quality score evaluation

Status: Open.

#56 In deepomicslab/SpecHLA;

· gunyorka opened on Jun 10, 2025

about extract fq form hg38 with alt contig or hg38 without alt contig

Status: Open.

#52 In deepomicslab/SpecHLA;

· LI-DINGYANG opened on Mar 12, 2025

update database

Status: Open.

#50 In deepomicslab/SpecHLA;

· DayTimeMouse opened on Feb 13, 2025

ERROR: Too many blocks, the phasing process must be wrong.

Status: Open.

#47 In deepomicslab/SpecHLA;

· maudeardin opened on Jan 9, 2025

Question about minimap2 parameters in long_read_typing.py

Status: Open.

#28 In deepomicslab/SpecHLA;

· karoliinas opened on Mar 26, 2024

Novoalign

Status: Open.

#18 In deepomicslab/SpecHLA;

· bsb2014 opened on Dec 5, 2023