Add sample-displacement/transparency corrections and standardize the FullProf verification suite#197

Merged

AndrewSazonov merged 41 commits into

cwl-sample-displacement-transparency

Jun 9, 2026

Commits on Jun 8, 2026

Commits on Jun 9, 2026

Add public Analysis.calculate() method

AndrewSazonov
and
claude
committed
Refactor FullProf verification loaders for project-dir API

AndrewSazonov
and
claude
committed
Add lazy pattern recalculation ADR suggestion

AndrewSazonov
and
claude
committed
Freeze FullProf .pcr files and regenerate bundled references

AndrewSazonov
and
claude
committed
Record sample-absorption modelling gap in open issues

AndrewSazonov
and
claude
committed
Rework CWL verification notebooks to canonical structure

AndrewSazonov
and
claude
committed
Rework TOF Si verification notebooks to canonical structure

AndrewSazonov
and
claude
committed
Replace NCAF reference with single-pattern FullProf data

AndrewSazonov
and
claude
committed
Rework remaining verification notebooks to canonical structure

AndrewSazonov
and
claude
committed
Show fit results and drop redundant calls in verification pages

AndrewSazonov
and
claude
committed
Apply formatting and lint fixes to analysis modules

AndrewSazonov
and
claude
committed
Register verification pages in nav and refine skip list

AndrewSazonov
and
claude
committed
Reflow SyCos correction comment to line-length limit

AndrewSazonov
and
claude
committed
Refactor FullProf loaders to satisfy complexity and lint

AndrewSazonov
and
claude
committed
Apply pixi run fix auto-fixes

AndrewSazonov
and
claude
committed
Update verification loader tests to project-dir API

AndrewSazonov
and
claude
committed
Test CWL sample displacement/transparency parameters

AndrewSazonov
and
claude
committed
Test cryspy SyCos/SySin CIF and dict mapping

AndrewSazonov
and
claude
committed
Skip NCAF verification page (tabulated IRF mismatch)

AndrewSazonov
and
claude
committed
Remove implemented cwl-sample-displacement-transparency plan

AndrewSazonov
and
claude
committed
Remove implemented test-suite-and-validation plan

AndrewSazonov
and
claude
committed
Comment out cryspy develop branch
AndrewSazonov
committed
Add Jorgensen Si verification page to docs nav

AndrewSazonov
and
claude
committed
Update verification index for canonical pages

AndrewSazonov
and
claude
committed
Re-theme metrics box background on dark-theme switch

AndrewSazonov
and
claude
committed
Generalize refinement wording in verification index

AndrewSazonov
and
claude
committed
Split nightly tests into per-tier steps with output checks

AndrewSazonov
and
claude
committed
Align pypi-test concurrency group with nightly

AndrewSazonov
and
claude
committed
Drop dead env vars and report all tiers in pypi-test

AndrewSazonov
and
claude
committed
Rename nightly.yml to nightly-test.yml

AndrewSazonov
and
claude
committed