Issues · malariagen/malariagen-data-python · GitHub

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Change in metadata structure of Pf9

#1333

· jonbrenas opened

on Jun 22, 2026

`pca`'s `cohorts` argument does not work the way it is expected to

#1328

· jonbrenas opened

on May 27, 2026

Test access to BAMs and VCFs on ENA/EVA with IGV

#1325

· jonbrenas opened

on May 8, 2026

Add missing stacklevel to warnings

#1317

· 31puneet opened

on Apr 22, 2026

veff.py: in-frame complex variants (MNP+INDEL) return literal "TODO" string as effect — invalid scientific output

#1315

· Tanisha127 opened

on Apr 18, 2026

cnv_frq.py Hardcodes X-Chromosome Sex-Linked Ploidy Assumption — Breaks CNV Frequency Analysis for Non-Gambiae Species

#1313

· khushthecoder opened

on Apr 18, 2026

ipinfo Location Check Silently Swallows All Network Errors With No Logging or Fallback Notification

#1311

· kunal-10-cloud opened

on Apr 18, 2026

dask.config.set() at Module Import Time in ag3.py Silently Modifies Global Dask Configuration

#1308

· khushthecoder opened

on Apr 17, 2026

CI Coverage Workflow Has Two Blind Spots — Excludes Root Modules and Uses Outdated Codecov Action

#1301

· kunal-10-cloud opened

on Apr 15, 2026

Integration Test and Notebook CI Workflows Use Hardcoded GCS Cache Key From September 2024

#1296

· kunal-10-cloud opened

on Apr 14, 2026

No Public API to Clear or Inspect In-Memory Caches — Users Cannot Reclaim Memory in Long-Running Sessions

#1289

· khushthecoder opened

on Apr 13, 2026

`diversity_stats` doesn't have a `max_cohort_size` parameter

#1288

· jonbrenas opened

on Apr 13, 2026