Skip to content

Pull requests: nf-core/modules

New pull request New
192 Open 8,506 Closed
192 Open 8,506 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add varlociraptor/filterfdr and update other varlo modules Ready for Review
#11964 opened Jun 10, 2026 by famosab Contributor Loading…
17 tasks
Add the finaletoolkit/adjustwps module
#11963 opened Jun 10, 2026 by lbeltrame Contributor Loading…
12 of 17 tasks
@lbeltrame
feat(fasta_gtf_bam_rpbp): add subworkflow size/l
#11962 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/selectfinalpredictionset): add module size/m
#11961 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/estimateorfbayesfactors): add module size/m
#11960 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/extractorfprofiles): add module size/m
#11959 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/getperiodiclengthsoffsets): add module size/m
#11958 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/selectperiodicoffsets): add module size/m
#11957 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/estimatemetagenebayesfactors): add module size/m
#11956 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/extractmetageneprofiles): add module size/m
#11955 opened Jun 10, 2026 by pinin4fjords Member • Draft
feat(rpbp/preparegenome): add module size/m
#11954 opened Jun 10, 2026 by pinin4fjords Member • Draft
Add new module: caddsv/get Ready for Review size/s
#11953 opened Jun 10, 2026 by manascripts Member Loading…
11 of 17 tasks
migrate metaphlan/* to topics
#11947 opened Jun 9, 2026 by atrigila Contributor • Draft
5
Update diamond modules to the latest version
#11940 opened Jun 9, 2026 by sofstam Contributor Loading…
17 tasks
Add plink_gwas_regenie subworkflow
#11938 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add plink_fit_regenie subworkflow
#11937 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add new component cnvkit/segment Ready for Review
#11936 opened Jun 9, 2026 by aadecock Contributor Loading…
12 of 17 tasks
1
@aadecock
Add new refinegems nf-core module with config-generation interface
#11935 opened Jun 9, 2026 by Copilot AI • Draft
1
@brovolia
POC Use of nfcore.utils for R templace
#11933 opened Jun 9, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
4
New module savana/cna Ready for Review
#11926 opened Jun 8, 2026 by manascripts Member Loading…
11 of 17 tasks
feat: chelae/trim
#11896 opened Jun 5, 2026 by emmcauley Contributor Loading…
12 of 17 tasks
1
Add new nf-core memote module with snapshot report output and nf-test coverage size/m
#11893 opened Jun 5, 2026 by Copilot AI • Draft
1
@brovolia
8
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
2
ProTip! Updated in the last three days: updated:>2026-06-07.