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Fix/adjust similarity resources #132

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Merged
dariarom94 merged 3 commits into from
Jun 7, 2026
Merged

Fix/adjust similarity resources #132

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4ffacc7
adjust resources
dariarom94 Jun 1, 2026
dffebe1
simplify resources
dariarom94 Jun 7, 2026
804a587
Merge branch 'main' into fix/adjust-similarity-resources
dariarom94 Jun 7, 2026
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3 changes: 3 additions & 0 deletions src/base/labels_nebius.config
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Expand Up @@ -111,6 +111,9 @@ process {
( workflow.containerEngine == "docker" ? '--gpus all': null ) }
}

withLabel: hightime { time = 12.h }
withLabel: veryhightime { time = 24.h }

// make sure publishstates gets enough disk space and memory
withName:'.*publishStatesProc' {
memory = '16GB'
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2 changes: 1 addition & 1 deletion src/methods_segmentation/watershed/config.vsh.yaml
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Expand Up @@ -173,5 +173,5 @@ runners:
- type: executable
- type: nextflow
directives:
label: [ hightime, midcpu, veryhighmem ]
label: [ hightime, midcpu, highmem ]

2 changes: 1 addition & 1 deletion src/methods_transcript_assignment/clustermap/config.vsh.yaml
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Expand Up @@ -154,4 +154,4 @@ runners:
- type: executable
- type: nextflow
directives:
label: [ veryhightime, midcpu, veryhighmem ]
label: [ veryhightime, midcpu, highmem ]
2 changes: 1 addition & 1 deletion src/methods_transcript_assignment/pciseq/config.vsh.yaml
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Expand Up @@ -163,4 +163,4 @@ runners:
- type: executable
- type: nextflow
directives:
label: [ veryhightime, midcpu, veryhighmem ]
label: [ veryhightime, midcpu, highmem ]
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